FIRE/Fastcompare predicted regulatory elements browser May 30, 2007

This browser combines and shows, for all genes in C. elegans, the predicted regulatory elements obtained from
1) running FIRE on 30+ C. elegans gene expression datasets (FIRE is described in Elemento*, Slonim* and Tavazoie, submitted)
2) comparing the upstream regions and 3′UTRs of C. elegans and C. briggsae (Elemento and Tavazoie, 2005; Chan*, Elemento* and Tavazoie, 2005).

Here is an example for pha-4.

New paper in PLoS Biology May 30, 2007

Our latest paper, “Unmasking Activation of the Zygotic Genome Using Chromosomal Deletions in the Drosophila Embryo” was published in the May edition of PLoS Biology. My first paper with a Nobel laureate as co-author

A supplementary database accompanies the paper.

Meeting report on CSHL Systems Biology 2007 meeting May 1, 2007

Genome Biology just published my report on the meeting.